PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006458-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 442aa    MW: 46426.5 Da    PI: 8.7274
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006458-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-056688123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  NNU_006458-RA 66 FVCEICNKGFQRDQNLQLHRRGH 88
                   89*******************88 PP

2zf-C2H212.30.00051142164123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H +t+
  NNU_006458-RA 142 WKCDKCSKKYAVQSDWKAHSKTC 164
                    58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.78E-76588No hitNo description
PROSITE profilePS5015710.9496688IPR007087Zinc finger, C2H2
PfamPF121716.9E-56688IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0176688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355210107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.4E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.78E-7137162No hitNo description
SMARTSM00355150142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MPAELENTSA VTVSTASGEA SASSSGNQTA PPSTTTKKKR NLPGMPDPDA EVIALSPKTL  60
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSK EVRKRVYVCP EPSCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAEESARA QTVANSNSEE DPKLQMVATA ATSSPPPASS APVISAGLPI  240
QNPELPERPT TLSAGSAAEP TSLCLSSTSL FAPVGAERRQ FAPLPQPAMS ATALLQKAAQ  300
MGAAGTNASL LRGLGLTMTS SSPSEQQESL QWSRRMEAEP APLAAGLGLG LPCEGGTATG  360
LTELMMGQSS LFGPRPTTLD LLGLGMGSGG APTGGLSALI TSIGGGLDVT AAAASFGGGG  420
SSPGRTWEEA SERKPNSPPA LL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491683.10.0PREDICTED: protein indeterminate-domain 2-like isoform X3
SwissprotQ9LVQ71e-162IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLA0A0B2RNP50.0A0A0B2RNP5_GLYSO; Zinc finger protein MAGPIE
STRINGBra036098.1-P1e-160(Brassica rapa)
STRINGfgenesh2_kg.8__2743__AT5G66730.11e-160(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-122indeterminate(ID)-domain 2